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Epidemiological Data from the COVID-19 Outbreak in Canada

The COVID-19 Canada Open Data Working Group is collecting publicly available information on confirmed and presumptive positive cases during the ongoing COVID-19 outbreak in Canada. Data are entered in a spreadsheet with each line representing a unique case, including age, sex, health region location, and history of travel where available. Sources are included as a reference for each entry. All data are exclusively collected from publicly available sources including government reports and news media. We aim to continue making updates daily.

Acknowledgements

We want to thank all individuals and organizations across Canada who have been willing and able to report data in as open and timely a manner as possible.

Please see below for a recommended citation of this dataset. A number of individuals have contributed to the specific data added here and their names and details are listed below, as well as in the contributors tab of the spreadsheet.

Citation

Berry I, Soucy J-PR, Tuite A, Fisman D. Open access epidemiologic data and an interactive dashboard to monitor the COVID-19 outbreak in Canada. CMAJ. 2020 Apr 14;192(15):E420. doi: https://doi.org/10.1503/cmaj.75262

Datasets

The line list of cases is posted and updated at: https://docs.google.com/spreadsheets/d/1D6okqtBS3S2NRC7GFVHzaZ67DuTw7LX49-fqSLwJyeo/edit?usp=sharing (direct download link).

The full data may be downloaded in a machine-readable format directly from this repository.

Individual-level Data

  • Codebook: codebook.csv
  • Cases: cases.csv
  • Mortality: mortality.csv
  • Date and time of update: update_time.txt

Health Region-level Time Series

  • Daily and cumulative cases: timeseries_hr/cases_timeseries_hr.csv
  • Daily and cumulative mortality: timeseries_hr/mortality_timeseries_hr.csv

Province-level Time Series

  • Daily and cumulative cases: timeseries_prov/cases_timeseries_prov.csv
  • Daily and cumulative mortality: timeseries_prov/mortality_timeseries_prov.csv
  • Daily and cumulative recovered: timeseries_prov/recovered_timeseries_prov.csv
  • Daily and cumulative testing: timeseries_prov/testing_timeseries_prov.csv
  • Current and change in active cases: timeseries_prov/active_timeseries_prov.csv

Canada-level Time Series

  • Daily and cumulative cases: timeseries_canada/cases_timeseries_canada.csv
  • Daily and cumulative mortality: timeseries_canada/mortality_timeseries_canada.csv
  • Daily and cumulative recovered: timeseries_canada/recovered_timeseries_canada.csv
  • Daily and cumulative testing: timeseries_canada/testing_timeseries_canada.csv
  • Current and change in active cases: timeseries_canada/active_timeseries_canada.csv

Other Files

  • Correspondence between health region names used in our dataset and HRUID values given in Esri Canada's health region map, with 2018 population values: other/hr_map.csv
  • Correspondence between ages given in the individual-level case data and age groups displayed on the data dashboard: other/age_map_cases.csv

Scripts

  • Data update (script used to prepare the data update each day): scripts/data_update.R
  • Data update validation (script used to help check the data update each day prior to release): scripts/data_update_validation.R

Data dashboard

We have also created an interactive dashboard for up-to-date visual analytics and epidemiological analyses.

This is available for public use at: https://art-bd.shinyapps.io/covid19canada/

Methodology and data notes

Our data collection methodology as well as specific notes about the data are listed on the "About the data" tab on our dashboard.

Specific Contributors

Name Role Organization Email Twitter
Isha Berry Founder University of Toronto isha.berry@mail.utoronto.ca @ishaberry2
Jean-Paul R. Soucy Founder University of Toronto jeanpaul.soucy@mail.utoronto.ca @JPSoucy
Meghan O'Neill Data Lead University of Toronto meghan.oneill@utoronto.ca @_MeghanONeill
Shelby Sturrock Data Lead University of Toronto shelby.sturrock@mail.utoronto.ca @shelbysturrock
James E. Wright Data Lead SickKids jamese.wright@sickkids.ca @JWright159
Kamal Acharya Contributor University of Guelph acharyak@uoguelph.ca @Kamalraj_ach
Gabrielle Brankston Contributor University of Guelph brankstg@uoguelph.ca @GBrankston
Vinyas Harish Contributor University of Toronto v.harish@mail.utoronto.ca @VinyasHarish
Kathy Kornas Contributor University of Toronto kathy.kornas@utoronto.ca
Thivya Naganathan Contributor University of Guelph tnaganat@uoguelph.ca
Lindsay Obress Contributor University of Guelph lobress@uoguelph.ca
Tanya Rossi Contributor University of Guelph rossit@uoguelph.ca @DrTanyaRossi
Alison Simmons Contributor University of Toronto alison.simmons@mail.utoronto.ca @alisonesimmons
Matthew Van Camp Contributor University of Guelph vancampm@uoguelph.ca
Wendy Xie Contributor University of Guelph xxie03@uoguelph.ca @XiaotingXie
Nika Maani Contributor University of Toronto nika.maani@mail.utoronto.ca

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