Phylogenetic analysis in R

An R package that facilitates highly customizable and reproducible visualizations of data over geological time intervals

🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

BioGeography with Bayesian (and likelihood) Evolutionary Analysis with R Scripts

MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree

Machuruku

A workflow for integrating ancient lineages into present-day phylogenies.

Explore spaces of phylogenetic trees

Sorting and subsampling phylogenomic datasets

A tool to identify and annotate homoplasies on a phylogeny and sequence alignment

rangemap: Simple Tools for Defining Species Ranges

R package for creating "phylo" objects free-hand

The general workflow for processing UCE data that I use

AstralPlane: R Package For Preparing, Running, Analyzing and Plotting from the Species Tree Program ASTRAL-III

❗ This is a read-only mirror of the CRAN R package repository. RPANDA — Phylogenetic ANalyses of DiversificAtion. Homepage: https://github.com/hmorlon/PANDA