SemiBin: metagenomics binning with self-supervised deep learning

resources for bioinformatics education

Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop

📝 Today I Learned

Toolkit for graph-relational data across space and time

Application and Python module for average nucleotide identity analyses of microbes.

Inkscape Layer Export

Predict AMPs in (meta)genomes and peptides

🗜 💻 A crash course on Data Compression.

A flexible developer tool that runs processes and responds to filesystem changes

resources for faculty

This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

Go app that allows you to access your reMarkable tablet files through the Cloud API

Scientific Inkscape: Inkscape extensions for figure resizing and editing

Parses your My Clippings.txt file, splitting them by book, removing duplicates, and outputting them in usable formats.

A Haskell library making it easier to write Alex lexers.

a framework for training sequence-level deep learning networks

NGLess: NGS with less work

A Fast and Safe Python based on PyPy

Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

Text outlining and task management for Vim based on Emacs' Org-Mode

Efficient Haskell Arrays featuring Parallel computation

Set up a personal VPN in the cloud

An analysis and visualization platform for 'omics data

You say 'stack ghci', I say 'stack notebook'...

The opposite of argparse

Diskbased (persistent) hashtable