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@lcrawlab

Crawford Lab

A group of computationally-minded researchers developing novel methods to address complex problems in genetics, cancer genomics, and radiomics.

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  1. BANNs BANNs Public

    Code and simulations using biologically annotated neural networks

    HTML 21 3

  2. i-LDSC i-LDSC Public

    Code and simulations using interaction-LD score regression

    Python 12 1

  3. mvMAPIT mvMAPIT Public

    The multivariate MArginal ePIstasis Test

    R 10 1

  4. callback callback Public

    Calibrated clustering via knockoffs for single-cell genomics

    R 9

  5. SINATRA SINATRA Public

    A statistical framework for feature selection and association mapping with 3D shapes

    R 8 4

  6. SINATRA-Pro SINATRA-Pro Public

    Topological data analytic approach for discovering biophysical signatures in protein dynamics

    Python 4

Repositories

Showing 10 of 15 repositories
  • recall Public

    Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing

    lcrawlab/recall’s past year of commit activity
    R 0 0 0 0 Updated Nov 19, 2024
  • mvMAPIT Public

    The multivariate MArginal ePIstasis Test

    lcrawlab/mvMAPIT’s past year of commit activity
    R 10 GPL-3.0 1 0 0 Updated Oct 21, 2024
  • callback Public

    Calibrated clustering via knockoffs for single-cell genomics

    lcrawlab/callback’s past year of commit activity
    R 9 0 0 0 Updated Jul 11, 2024
  • i-LDSC Public

    Code and simulations using interaction-LD score regression

    lcrawlab/i-LDSC’s past year of commit activity
    Python 12 GPL-3.0 1 1 0 Updated Jul 2, 2024
  • multio-viz Public

    A platform for the interactive assessment of gene regulatory networks

    lcrawlab/multio-viz’s past year of commit activity
    R 3 GPL-3.0 0 0 0 Updated May 10, 2024
  • SINATRA-Pro Public

    Topological data analytic approach for discovering biophysical signatures in protein dynamics

    lcrawlab/SINATRA-Pro’s past year of commit activity
    Python 4 MIT 0 0 0 Updated Mar 14, 2024
  • callbackreproducibility Public
    lcrawlab/callbackreproducibility’s past year of commit activity
    R 0 0 0 0 Updated Mar 13, 2024
  • ashapesampler_paper_results Public

    Code to reproduce analyses and results provided in the alpha shape sampler paper beyond what is given in the R package.

    lcrawlab/ashapesampler_paper_results’s past year of commit activity
    HTML 0 0 0 0 Updated Feb 1, 2024
  • ashapesampler Public

    R package for generating synthetic shapes and images using the α-shape sampler

    lcrawlab/ashapesampler’s past year of commit activity
    R 0 GPL-3.0 1 0 0 Updated Feb 1, 2024
  • GOALS Public

    Code and tutorials for implementing the GlObal And Local Score

    lcrawlab/GOALS’s past year of commit activity
    R 0 AGPL-3.0 0 0 0 Updated Oct 20, 2023
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