Low code molecular property prediction

A generalized computational framework for biomolecular modeling.

Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3

All inference and training scripts and relevant data for Spinner, A., DeBenedictis, E., & Hudson, C. M. (2025). Scaling and Data Saturation in Protein Language Models. Proceedings of the ICML GenBi…

Code and Data for "A flaw in using pre-trained pLLMs in protein-protein interaction inference models"

AlphaGo Moment for Model Architecture Discovery.

Protein Engineering via Exploration of an Energy Landscape

Adaptive Gradient Clipping

Protein representation and design under a single training scheme

A Python Library Implementing Dimension Insensitive Euclidean Metric (DIEM)

Project website for ["Harnessing the Universal Geometry of Embeddings"](https://arxiv.org/abs/2505.12540)

Foldseek enables fast and sensitive comparisons of large structure sets.

This repo contains the results data for Round 2 of EGFR Protein Design Competition.

Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”

The first 100B protein language model from biomap

Original implementation of the paper "SMILES Transformer: Pre-trained Molecular Fingerprint for Low Data Drug Discovery" by Shion Honda et al.

DFloat11: Lossless LLM Compression for Efficient GPU Inference

The Family of Diffusion Protein Language Models (DPLM)

Automatically exported from code.google.com/p/cdhit