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IQ-TREE version 3: software for phylogenetics

C++ 142 33 Updated May 26, 2026

Turn any AI agent into an AI Scientist. The #1 Agent Skills library for science, used by 160,000+ scientists worldwide. 140 ready-to-use skills plus 100+ scientific databases covering biology, chem…

Python 28,261 2,903 Updated Jun 15, 2026

Semi-automated research assistant for academic research and software development. Supports Claude Code, Codex CLI, Kimi Code CLI, and OpenCode across ideation, coding, experiments, writing, and pub…

Python 4,318 377 Updated Jun 5, 2026

Species rich phylogeny of insects, synthesizing phylogenomics backbone, grafted subtrees from a collection of published results, with terminal set harmonized with public DNA barcodes.

Perl 2 Updated May 26, 2026

📜 Discover and install useful RStudio addins

R 871 139 Updated Aug 18, 2024

A taxonomic toolbelt for R

R 300 65 Updated May 12, 2026

Awesome-AI-Virtual-Cell: A curated list of papers, datasets, benchmarks, talks, and community resources for AI-powered virtual cell research.

Jupyter Notebook 253 17 Updated May 27, 2026

A curated list of scientific figures in research papers.

35 4 Updated Apr 28, 2026

Design primers for species-specific qPCR

Python 10 2 Updated Jun 1, 2017

🦖 ClawBio - The first bioinformatics-native AI agent skill library. Local-first. Reproducible. Built on OpenClaw.

Python 972 197 Updated Jun 15, 2026
Python 4 Updated Dec 2, 2019

Elevate your AI research writing, no more tedious polishing ✨

28,489 2,222 Updated May 18, 2026

Amplicon sequencing analysis workflow using DADA2 and QIIME2

Nextflow 250 156 Updated Jun 15, 2026

Bioinformatics pipeline for data used in CORAL paper

R 3 Updated Apr 26, 2024

Optimize OTU clustering thresholds

C++ 7 Updated Apr 27, 2026

GPU-accelerated DNA barcode classification

Python 14 4 Updated Jan 2, 2025

This is the repository for the final analysis used in Van Klink et al 2020 Meta-analysis reveals declines in terrestrial but increases in freshwater insect abundances. With this code all analyses i…

R 2 2 Updated Feb 28, 2020

Making notes during study 'Numerical Ecology with R second edition'

HTML 24 8 Updated Aug 9, 2019
HTML 384 244 Updated Jan 21, 2026
Python 19 Updated Jun 12, 2026

R package supporting interactive data access on BOLD

R 22 4 Updated Jun 10, 2026

AMPtk: Amplicon ToolKit for NGS data (formally UFITS)

Python 39 13 Updated Nov 18, 2023

学术双语简历模板,涵盖教育背景、论文发表、项目经历、竞赛经历和个人陈述等关键部分,可适用于申请研究生项目、学术职位或相关行业岗位。

241 23 Updated Jun 22, 2025

scripts for Biodiversity Soup II paper

Shell 2 2 Updated Oct 2, 2021

Scripts for the ScreenForBio metabarcoding pipeline: Protax

Shell 3 3 Updated Aug 7, 2022

Workflow for processing deep metabarcoding data

Python 5 Updated May 14, 2026

A web tool for species identification of metabarcoding DNA sequences by estimating phylogenetic trees.

HTML 8 Updated Oct 1, 2025

A robust and fast clustering method for amplicon-based studies

C++ 147 23 Updated Jun 15, 2026

Distance denoise by Entropy

Python 15 3 Updated Oct 17, 2025
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