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AccuSNV Public
High-accuracy SNV calling for bacterial isolates using deep learning
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SickleSight Public
AI-Based Toolkit for Quantitative Analysis of Sickle Cell Disease Dynamics
Python UpdatedMay 27, 2026 -
VirStrain Public
An RNA virus strain-level identification tool for short reads.
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedApr 5, 2026 -
accusnv-eval Public
Custom scripts for the experiments of the AccuSNV paper
Python UpdatedFeb 4, 2026 -
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StrainAMR Public
A learning-based tool to predict antimicrobial resistance and identify AMR-related genomic features from bacterial strain genomes
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Veta_copy Public
Forked from Jimmy0743/Veta基于大模型构建的在线 AI 问诊的多智能体宠物医生 Agent。系统面向多种常见宠物疾病，整合并构建高质量的知识库，能够通过多轮对话实现智能化问诊。项目结合 Prompt Engineering 与 LangGraph 框架，支持用户与智能体之间的自然交互，最终为用户提供个性化的药物与治疗方案推荐。
C MIT License UpdatedOct 13, 2025 -
AnnoSINE_v2 Public
Forked from oushujun/AnnoSINE_v2Accelerating de novo SINE annotation in plant and animal genomes
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Scripts used to generate beautiful figures in the paper.
HTML UpdatedFeb 16, 2025 -
WideVariant Public
Forked from liebermanlab/WideVariantPrecision evolutionary analysis of large intraspecies microbial data sets using a 2-step interactive pipeline
Python MIT License UpdatedFeb 7, 2025 -
StrainScan Public
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
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GDmicro Public
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
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MetaComp Public
MAEP(Metagenomics Assembly Evaluation Pipeline). This pipeline is a new version of LAEP.
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StrainKmer Public
StrainKmer- an efficient and user-friendly tool for extracting viral strains' k-mers from raw sequencing data
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StrainAnalyze Public
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.
Python UpdatedFeb 13, 2023 -
StrainDetect Public
StrainDetect is an online viral strain-level analysis tool based on VirStrain.
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HOTSPOT Public
Forked from Orin-beep/HOTSPOTHOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
Python UpdatedNov 11, 2022 -
RNA_virus_detector Public
Forked from GreyGuoweiChen/VirBotVirBot: a protein-based RNA virus detector for metagenomic data
Python UpdatedOct 21, 2022 -
LRTK Public
Forked from ericcombiolab/LRTKA unified and versatile toolkit for analyzing Linked-Read sequencing data
C MIT License UpdatedSep 9, 2022 -
PlantBind Public
Forked from wenkaiyan-kevin/PlantBindA tool for predicting transcription factor binding sites in plants
Python UpdatedJun 5, 2022 -
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SibeliaZ Public
Forked from medvedevgroup/SibeliaZA fast whole-genome aligner based on de Bruijn graphs
C++ Other UpdatedSep 17, 2021 -
PhaGCN Public
Forked from KennthShang/PhaGCNGCN classifier for phage taxanomy classification
Python UpdatedSep 17, 2021 -
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quast Public
Forked from ablab/quastGenome assembly evaluation tool
AMPL Other UpdatedMay 22, 2021 -
IDMIL Public
Forked from mrahma23/IDMILIDMIL: An alignment-free interpretable deep multiple instance learning (MIL) for predicting disease from whole-metagenomic data
Python GNU General Public License v3.0 UpdatedJan 22, 2021 -
PStrain Public
Forked from wshuai294/PStrainAn Iterative Microbial Strains Profiling Algorithm for Shotgun Metagenomic Sequencing Data.
Shell UpdatedDec 30, 2020
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