The source code for "High-Parameter Spatial Multi-Omics through Histology-Anchored Integration"

Dirichlet Process based methods for subclonal reconstruction of tumours

Battenberg R package for subclonal copynumber estimation

Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)

Efficient large scale phenotype simulator

OTMODE: An Optimal Transport-Based Framework for Differential Feature Identification in Single-Cell Multi-Omics

Official GitHub repository for the manuscript entitled "Computational Design of Metallohydrolases" by Kim, Woodbury, & Ahern et al. published in Nature. This notebook contains (1) tutorials on how …

PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.

Inference code for RFdiffusion2

scRNAseq20250408

Single-cell epigenomics analysis tools with functionality for RNA-seq processing

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

Calculate the probability used for correcting the distribution of waiting distances in ARG

Prior-Oblivious Length Estimation in Genealogies with Oriented Network

"猛犸杯"-宏基因组分析流程

Using Deep Learning to predict gene annotations

DeepCOI: a Large Language Model-Driven Framework for Fast and Accurate Taxonomic Assignment in Animal Metabarcoding

Code written for the Y chromosome Yq12 region analyses

HGSVC SIG: targeted chromsome Y assembly