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Add Visium HD, Imaging-based, and Dimension Reduction on text annotation in vignette #96

Add Visium HD, Imaging-based, and Dimension Reduction on text annotation in vignette

Add Visium HD, Imaging-based, and Dimension Reduction on text annotation in vignette #96

Triggered via pull request October 4, 2025 21:04
Status Failure
Total duration 13m 27s
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check-bioc.yml

on: pull_request
bioc-config
2s
bioc-config
Matrix: build-check
docker-build-and-push
docker-build-and-push
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11 errors and 9 warnings
macOS-latest (4.5)
Process completed with exit code 1.
macOS-latest (4.5)
Failed to install 'ggspavis' from local:
macOS-latest (4.5)
Vignette re-building failed.
macOS-latest (4.5)
processing vignette 'ggspavis_overview.Rmd' failed with diagnostics:
macOS-latest (4.5)
--- re-building ‘ggspavis_overview.Rmd’ using rmarkdown
ubuntu-latest (4.5)
Process completed with exit code 1.
windows-latest (4.5)
Process completed with exit code 1.
windows-latest (4.5)
Failed to install 'ggspavis' from local:
windows-latest (4.5)
Vignette re-building failed.
windows-latest (4.5)
processing vignette 'ggspavis_overview.Rmd' failed with diagnostics:
windows-latest (4.5)
package or namespace load failed for 'AnnotationHub' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
macOS-latest (4.5)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (4.5)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (4.5)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (4.5)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (4.5)
unable to access index for repository https://bioconductor.org/packages/3.22/data/experiment/bin/macosx/big-sur-arm64/contrib/4.5:
macOS-latest (4.5)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (4.5)
harfbuzz 11.5.1 is already installed and up-to-date. To reinstall 11.5.1, run: brew reinstall harfbuzz
ubuntu-latest (4.5)
No files were found with the provided path: check. No artifacts will be uploaded.
windows-latest (4.5)
No files were found with the provided path: check. No artifacts will be uploaded.