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13 results for source starred repositories
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πŸ„ Qiime2 ITS classifiers for the UNITE database

HTML 47 9 Updated Aug 4, 2025

πŸ”¬ β™Œ Bacterial ribosomal RNA predictor

Perl 266 43 Updated Dec 24, 2025

A user-friendly version of FastStructure

Cython 6 Updated Jan 9, 2024

MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates

Nextflow 81 43 Updated Dec 16, 2025

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

C 1,685 570 Updated Mar 22, 2025

An imagemagick-like frontend to Biopython SeqIO

Python 117 21 Updated Mar 18, 2024

Finds SNP sites from a multi-FASTA alignment file

C 271 49 Updated Dec 16, 2020

SCGid, a consensus approach to contig filtering and genome prediction from single-cell sequencing libraries

Python 3 3 Updated May 9, 2024

SRA Tools

C 1,288 269 Updated Dec 23, 2025

Development of short tutorials for UNM's Center for Advanced Research Computing

Jupyter Notebook 21 18 Updated Dec 3, 2025

Genome Association Predict Integrate Tools

R 216 72 Updated Dec 3, 2025

Some useful R classes and functions that were useful to my research.

R 1 Updated Feb 4, 2025

🎨 Harry Potter inspired palette for R

HTML 108 6 Updated Mar 5, 2020