plotthis is an R package that is built upon ggplot2 and other plotting packages.

scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing and spatial data in an easy and efficient way.

Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data

Reanalysis of the scRNA-seq and scTCR-seq data from Zheng, Y., et al. 2020 using immunopipe.

Reanalysis of the scRNA-seq and scTCR-seq data from Liu, B., et al. 2022 using immunopipe.

Reanalysis of the data from Wu, Thomas D., et al. 2020 using immunopipe.

Reanalysis of the scRNA-seq and scTCR-seq data from Mahuron, Kelly M., et al. 2020 using immunopipe.

Reanalysis of the scRNA-seq and scTCR-seq data from Gate, David, et al., 2021 using immunopipe.

Reanalysis of the scRNA-seq and scTCR-seq data from Luoma, Adrienne M., et al. 2020 using immunopipe.

Reanalysis of the scRNA-seq and scTCR-seq data from Cheon, I. S., 2021 using immunopipe.

Reanalysis of the scRNA-seq and scTCR-seq data from Azizi, Elham, et al. 2018 using immunopipe.

Reanalysis of the scRNA-seq and scTCR-seq data from Eberhardt, Christiane S., et al., 2021 using immunopipe.

A pipen CLI plugin to run commands via Google Cloud Batch.

A set of processes/pipelines for bioinformatics

Recipes for conda packages

A pipeline framework for python

A Grammar of Data Manipulation in python

The pandas backend for datar

The numpy backend for datar.

Polars backend for datar

A framework for data piping in python

A job management system for python

Universal sync/async local/cloud path library with pathlib-compatible interface for Python

Save running logs to file for pipen

Use docstring to annotate pipen processes

Generate running information for jobs in pipen pipelines.