Parallelized DiscreteHMM.sample()#3053
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Nice work @ordabayevy! The algorithm looks good to me.
Could you update the docstring to reflect complexity changes, in particular the two paragraphs
This uses [1] to parallelize over time, achieving O(log(time)) parallel
complexity for computing :meth:log_proband :meth:filter.
and
The :meth:
samplemethod is sequential (not parallized), slow, and memory
inefficient. It is intended for data generation only and is not recommended
during inference.
fritzo
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Thanks for reviewing @fritzo ! |
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This is a follow up PR to #3050 that proposes to use sampling approach based on parallel-scan algorithm.