Stars
Documentation for GNPS and related tools as written in mkdocs
📦 Repomix is a powerful tool that packs your entire repository into a single, AI-friendly file. Perfect for when you need to feed your codebase to Large Language Models (LLMs) or other AI tools lik…
Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly
Single-cell analysis in Python. Scales to >100M cells.
SIRIUS is a software for discovering a landscape of de-novo identification of metabolites using tandem mass spectrometry. This repository contains the code of the SIRIUS Software (GUI and CLI)
Prov-GigaPath: A whole-slide foundation model for digital pathology from real-world data
Open Babel is a chemical toolbox designed to speak the many languages of chemical data.
A generalized computational framework for biomolecular modeling.
Central repository for biomolecular foundation models with shared trainers and pipeline components
A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
Multiple Protein Structure Alignment at Scale with FoldMason
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
P2Rank: Protein-ligand binding site prediction from protein structure based on machine learning.
fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and…
Windows X-server based on the xorg git sources (like xming or cygwin's xwin), but compiled with Visual Studio 2012 Community Edition.
Foldseek enables fast and sensitive comparisons of large structure sets.
MMseqs2: ultra fast and sensitive search and clustering suite
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
Follow up to Grace Blackwell's 661k dataset, for 2023