Cloud-native genomic dataframes and batch computing

A natural language interface for computers

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Code, unit tests, and tutorials for running PICRUSt2

A short introduction to processing and assembly of short (Illumina) NGS sequencing data

Command-line program to download videos from YouTube.com and other video sites

Statistical Analysis of RNA-Seq Tools

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Online R learning for applied statistics

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Gene cluster comparison figure generator

Code and examples for JHU Computational Genomics class

ChIP-seq analysis notes from Ming Tang

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

Tool that allows you to add more games to your NES/SNES Classic Mini. WARNING: hakchi2 is no longer supported. Please use hakchi2 CE.

An interactive and integrated web-based tool for comparing gene lists

Useful bash one-liners for bioinformatics.

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

Analysis pipeline for the GUIDE-seq assay.

Collection of commonly used RDP Tools for easy building

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

Find nearby Pokéstops

Quick mining and visualization of NGS data by integrating genomic databases

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

A toolbox for pangenome analysis and threshold evaluation.

A short introduction to using Docker in Bioinformatics