Command-line program to download videos from YouTube.com and other video sites

A natural language interface for computers

Torch implementation of neural style algorithm

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

Useful bash one-liners for bioinformatics.

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

Cloud-native genomic dataframes and batch computing

ChIP-seq analysis notes from Ming Tang

Gene cluster comparison figure generator

Online R learning for applied statistics

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Code, unit tests, and tutorials for running PICRUSt2

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Code and examples for JHU Computational Genomics class

Quick mining and visualization of NGS data by integrating genomic databases

Course materials for BIOST561

Notebooks to introduce biopython

a signal-level demultiplexer for Oxford Nanopore reads

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Statistical Analysis of RNA-Seq Tools

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

A toolbox for pangenome analysis and threshold evaluation.

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

Analysis pipeline for the GUIDE-seq assay.

FluentDNA allows you to browse sequence data of any size using a zooming visualization similar to Google Maps. You can use FluentDNA as a standalone program or as a python module for your own bioin…

A Python program which parses city data and Google location history files (in JSON), interpolates data point between flights and train rides, projects the data points onto a Mercator map, and then …

Collection of commonly used RDP Tools for easy building

The Microbiome Interpretable Temporal Rule Engine

Python module for the easy handling and analysis of DNase-seq data