Skip to content
View passdan's full-sized avatar

Block or report passdan

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
21 results for source starred repositories written in Python
Clear filter

Command-line program to download videos from YouTube.com and other video sites

Python 138,693 10,526 Updated Oct 18, 2025

A natural language interface for computers

Python 60,791 5,214 Updated Nov 3, 2025

Cloud-native genomic dataframes and batch computing

Python 1,035 256 Updated Nov 7, 2025

ChIP-seq analysis notes from Ming Tang

Python 827 309 Updated Aug 5, 2024

Gene cluster comparison figure generator

Python 622 74 Updated Nov 25, 2024

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Python 551 91 Updated Oct 28, 2025

Code, unit tests, and tutorials for running PICRUSt2

Python 372 113 Updated Oct 23, 2025

a signal-level demultiplexer for Oxford Nanopore reads

Python 126 23 Updated Jan 18, 2021

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

Python 120 15 Updated Jan 22, 2025

Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

Python 91 38 Updated Aug 22, 2025

Analysis pipeline for the GUIDE-seq assay.

Python 80 61 Updated Jun 14, 2023

A Python program which parses city data and Google location history files (in JSON), interpolates data point between flights and train rides, projects the data points onto a Mercator map, and then …

Python 52 5 Updated Jan 24, 2021

The Microbiome Interpretable Temporal Rule Engine

Python 46 4 Updated May 26, 2021

Python module for the easy handling and analysis of DNase-seq data

Python 37 24 Updated Jul 18, 2019

Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.

Python 31 25 Updated Sep 11, 2025

Find nearby Pokéstops

Python 21 4 Updated May 22, 2023

Python implementation of 7 wonders base game

Python 20 13 Updated Jan 6, 2015
Python 9 11 Updated Jun 29, 2023

Logfold script for reptiming

Python 7 4 Updated Mar 16, 2018

Forbidden Island game for CSU CS440 FALL 2014 project

Python 4 1 Updated Dec 18, 2014

PHoP (PICRUSt Heatmaps of PhyloChip data) v0.1.2

Python 2 Updated Nov 30, 2016