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  • UMC Utrecht
  • Utrecht, The Netherlands

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10 stars written in Jupyter Notebook
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🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained

Jupyter Notebook 24,424 4,166 Updated Nov 23, 2025

Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

Jupyter Notebook 1,559 487 Updated Dec 11, 2022

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Jupyter Notebook 422 70 Updated Mar 30, 2026
Jupyter Notebook 69 10 Updated Nov 17, 2025

Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"

Jupyter Notebook 41 4 Updated Sep 5, 2021

Single Cell Epigenome-based Inference of Activity

Jupyter Notebook 19 2 Updated Sep 27, 2023

Supplementary data and figures for the paper 'Success and randomness in creative careers' published in EPJ Data Science

Jupyter Notebook 10 1 Updated Sep 17, 2019

Human adrenal gland paper

Jupyter Notebook 4 3 Updated Dec 14, 2024

Analysis scripts for Vuong & Cook et al. (2018)

Jupyter Notebook 3 1 Updated Feb 13, 2018

3 Minutes Machine Learning

Jupyter Notebook 1 Updated Sep 13, 2023