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TEA-GCN Public
Two-Tier Ensemble Aggregation Gene Co-expression Network (TEA-GCN): Capturing tissue/condition-specific co-expression from large transcriptomic datasets
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CxNE_plants Public
Generation Co-expression Network Embeddings (CxNEs) for plant genes using Graph Attention Networks (GAT))
machine-learning artificial-intelligence embedding-models graph-neural-networks gene-embedding protein-embedding graph-attention-networkPython UpdatedDec 18, 2024 -
Plant-GCN Public
Analyses and tools pertaining to Gene Coexpression Network Analyses of the Plant Kingdom
Python UpdatedOct 2, 2023 -
LSTrAP-denovo Public
LSTrAP-denovo is an easy-to-use pipeline to assemble and annotate transcripts for species without genome / genomic annotations using publicly available RNA-seq data.
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