A web scraper for extracting protein domain, taxonomy, and functional annotation data from the InterPro database.

A comprehensive pipeline for RNAseq data analysis

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Pileup biallelic SNPs from single-cell and bulk RNA-seq data

RNA-Seq Workflow Based on Snakemake and Conda

Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

A 3D genome data processing tutorial for ISMB/ECCB 2017

RNA velocity estimation in R

Generate cellular maps of differentiation manifolds with complex topologies.

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Convert a Genbank flat file to an NCBI ptt file

Analysis of single-cell RNA-sequencing data described in the paper titled, "Deconstructing adipogenesis induced by beta3-adrenergic receptor activation with single cell expression profiling", publi…

An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

A SingleCell RNASeq pre-processing snakemake workflow

Processing of single-cell (Fluidigm C1 and 10x) and population (Truseq and brbseq) RNA-seq data related to Areg discovery and characterisation in mouse subcutaneous stromal vascular fraction cells

small rna-seq analysis package

Aggregate results from bioinformatics analyses across many samples into a single report.

Summarize sizes of directories and files in directories