Stars
A framework for state-of-the-art pre-trained bio foundation models on genomics and transcriptomics modalities.
optlang - sympy based mathematical programming language
Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.
Python toolbox for phenotype analysis of arrayed microbial colonies
✔️ Automated Grading Tool that Checks the Work of Writers and Programmers
Tools to automate github classroom and autograding workflows
This is my first depository. No hate.
Minimalist Jekyll Template, dark and light themes
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
CarveMe: genome-scale metabolic model reconstruction
Python library for bio-inspired computational intelligence
memote – the genome-scale metabolic model test suite
D3.js based visualizations of cobrapy metabolic models
Python package to study microbial communities using metabolic modeling.
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
SymEngine is a fast symbolic manipulation library, written in C++
High-level, high-performance, constraint-based reconstruction and analysis in Julia
ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
⚡ A Fast, Extensible Progress Bar for Python and CLI
Fast genome-wide functional annotation through orthology assignment
Rap song writing recurrent neural network trained on Kanye West's entire discography
🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python…
Python Environment for Modeling and Simulating Biological Systems
Bounds checking and other validation for Protocol Buffers in Python