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EfficientSAM3 compresses SAM3 into lightweight, edge-friendly models via progressive knowledge distillation for fast promptable concept segmentation and tracking.
An extremely fast Python type checker and language server, written in Rust.
This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward finding cures for Inflammatory Bowel Disease (IBD). To lear…
A repository with a few public metabolomics datasets borrowed from different public open sources
A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
TabICLv2: A state-of-the-art tabular foundation model
[ICLR 2026] RF-DETR is a real-time object detection and segmentation model architecture developed by Roboflow, SOTA on COCO, designed for fine-tuning.
Plain-language guide to causal inference for microbiome & multi-omics: DAGs/backdoor, confounders vs mediators/colliders, causal mediation (ACME/ADE/Total), and Double Machine Learning (DML) with t…
MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.
IMILIA: interpretable multiple instance learning for inflammation prediction in IBD from H&E whole slide images
Download FASTQ files from SRA or ENA repositories.
Crawlee—A web scraping and browser automation library for Python to build reliable crawlers. Extract data for AI, LLMs, RAG, or GPTs. Download HTML, PDF, JPG, PNG, and other files from websites. Wo…
Tongyi Deep Research, the Leading Open-source Deep Research Agent
Book about interpretable machine learning
Build and run agents you can see, understand and trust.
🔅 Shapash: User-friendly Explainability and Interpretability to Develop Reliable and Transparent Machine Learning Models
Official Code of Memento: Fine-tuning LLM Agents without Fine-tuning LLMs
TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools
Meta-analysis of microbiome composition measured by 16S rRNA seq in IBS case-control studies
An implementation of Google Deep Search 🕵️ with support for 1000+ references, local inference, chatting with your scraping session using RAPTOR, and report generation.
Agent harness built with LangChain and LangGraph. Equipped with a planning tool, a filesystem backend, and the ability to spawn subagents - well-equipped to handle complex agentic tasks.
Curated Metagenomic Data of the Human Microbiome