Simple and Customizable Tables in `R`

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

All code for manuscript 'Identifying a List of Salmonella Serotypes of Concern to Target for Reducing Risk of Salmonellosis'

SEER, reimplemented in python 🐍🔮

screencasts of windows with list of keystrokes overlayed

I've given up, it's gonna be Python this year

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

My Advent of Code submissions. For 2021 and before, these are the original code I used, without any modifications after-the-fact. As such, they are probably not as efficient or short as they should…

Modern C++ Programming Course (C++03/11/14/17/20/23/26)

Code for the paper "Antimicrobial resistance prediction in clinical isolates through machine learning on MALDI-TOF mass spectra"

Implementation of the Leiden algorithm for various quality functions to be used with igraph in Python.

Make awesome display tables using Python

Fast and flexible ORF finder

Cookiecutter for rapidly creating modern & high-quality Python packages

A grammar of graphics for comparative genomics

A simple Snakemake profile for Slurm without --cluster-config

Fast and frugal disk based k-mer counter

MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data

A starter template to build websites with Ghost & Eleventy

Classification and topic analysis of video game reviews, trained on Steam user reviews.

Binary Search Tree Project Odin Project

A repository full of Reflex example apps.

Resumes generated using the GitHub informations

Code and data associated with an exhaustive search for homomorphisms to finite Coxeter groups for knots with 16 or fewer crossings

An R package to evaluate PCR results

Easily install and load the tidymodels packages