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@cobilab @asilab @othersoft @viromelab @waterpt @gendna @ieeta-pt

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Showing results
C 1 Updated May 7, 2026
Jupyter Notebook 3 Updated Oct 20, 2025

A XGB model for aptamer target prediction. A set of tools for DNA and Protein feature extraction. A dataset that compiles information from 6 different sources of aptamer information.

Python 3 Updated Jan 28, 2026

Classification and Analysis of genomes using Explainable Machine Learning

C 1 Updated Feb 18, 2026
C++ 1 Updated Oct 11, 2024

Benchmarking pipeline for text age prediction using tree-based models (CatBoost, Random Forest, XGBoost), with feature extraction, and evaluation on selectable datasets, and support for SHAP, PCA a…

Python 1 Updated Feb 12, 2026

Automatic Annotation of Plant Gene Regions with Machine Learning

Jupyter Notebook 2 Updated Mar 4, 2026

A tool to infer metagenomic sample composition

C 4 Updated Apr 15, 2026

This generator oversamples data extracted from XRF analysis of coins.

Python 1 Updated Jan 19, 2025

A toolkit for sequence data analysis

C 1 Updated Nov 21, 2025

A compression tool specifically designed for FASTA and multi-FASTA files using finite-context models and arithmetic coding

C 3 Updated May 7, 2025
Python 1 Updated Feb 19, 2025
Shell 1 Updated Dec 5, 2024

Robs manual for the computational genomics and bioinformatics class.

HTML 270 68 Updated Nov 12, 2024

Optimize compression parameters of Jarvis3

Shell 2 Updated Apr 10, 2025

Sorting of DNA sequences within a Multi-Fasta file

Shell 1 Updated Feb 22, 2024
Shell 1 Updated Feb 19, 2026

A sorting method for encoding metagenomic data

Shell 1 Updated Nov 7, 2023

An encoder for biological sequences using Copy Models and Finite-context models

2 Updated Feb 10, 2025

An ultra-fast and high-sensitive tool to filter specific DNA content

C 2 3 Updated Mar 5, 2025

Efficient compression of biological data

C 7 Updated Mar 14, 2026

A computational tool for simulation of viral synthetic integrations

C 1 Updated Mar 15, 2023

Comparative evaluation of computational methods for reconstruction of human viral genomes

Shell 7 Updated Mar 5, 2026

Cooperative Pipeline for human viral genome reconstruction

Shell 2 2 Updated Feb 20, 2025
Python 5 1 Updated Apr 22, 2023
R 1 Updated Feb 16, 2023

Cobilab website

JavaScript 2 2 Updated Mar 26, 2025

This program schools, simulates, and searches for exact or approximate Turing Machines (TMs) with specific characteristics.

C 2 1 Updated May 21, 2025
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