Highlights
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rsidx Public
Forked from bioforensics/rsidxLibrary for indexing VCF files for random access searches by rsID
Python Other UpdatedJul 21, 2025 -
lineax Public
Forked from patrick-kidger/lineaxLinear solvers in JAX and Equinox. https://docs.kidger.site/lineax
Python Apache License 2.0 UpdatedApr 9, 2025 -
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jax Public
Forked from jax-ml/jaxComposable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more
Python Apache License 2.0 UpdatedAug 26, 2024 -
Randomly-Pivoted-Cholesky Public
Forked from eepperly/Randomly-Pivoted-CholeskyCode for the paper "Randomly pivoted Cholesky: Practical approximation of a kernel matrix with few entry evaluations"
Python MIT License UpdatedDec 20, 2023 -
optimistix Public
Forked from patrick-kidger/optimistixNonlinear optimisation (root-finding, least squares, ...) in JAX+Equinox. https://docs.kidger.site/optimistix/
Python Apache License 2.0 UpdatedNov 4, 2023 -
numpyro Public
Forked from pyro-ppl/numpyroProbabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
Python Apache License 2.0 UpdatedOct 12, 2021 -
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pyfizi-feedstock Public
Forked from conda-forge/pyfizi-feedstockA conda-smithy repository for pyfizi.
BSD 3-Clause "New" or "Revised" License UpdatedAug 10, 2021 -
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geno-sugar Public
Forked from limix/geno-sugarUtilities for handling genetic data for GWAS
Python Apache License 2.0 UpdatedFeb 23, 2019 -
staged-recipes Public
Forked from conda-forge/staged-recipesA place to submit conda recipes before they become fully fledged conda-forge feedstocks
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 22, 2019 -
limix-feedstock Public
Forked from conda-forge/limix-feedstockA conda-smithy repository for limix.
Shell BSD 3-Clause "New" or "Revised" License UpdatedFeb 6, 2019 -
mister Public
Simulation study of various Mendelian Randomization approaches using summary data
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BFFs Public
comparison of a few ways to infer posterior values under a causal linear mixed model
Python MIT License UpdatedSep 5, 2018 -
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prior_var_empbayes Public
Testing empirical bayes for inference of prior variance terms in finemapping
Python GNU General Public License v3.0 UpdatedApr 25, 2018 -
LinearThunderdome Public
Thunderdome of linear models in ill-conditioned settings
Python GNU General Public License v3.0 UpdatedApr 23, 2018 -
CLAPmagrittrCLAP Public
Forked from tidyverse/magrittrImprove the readability of R code with the pipe
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fusion_twas Public
Forked from gusevlab/fusion_twasmethods for functional summary-based imputation
R GNU General Public License v3.0 UpdatedFeb 16, 2018 -
sleuth Public
Forked from pachterlab/sleuthDifferential analysis of RNA-Seq
R GNU General Public License v3.0 UpdatedJan 25, 2018 -
REMLSketch Public
Sketching version of REML inference
Python GNU General Public License v3.0 UpdatedSep 7, 2017 -
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DS2VCF Public
Annotate VCF file with dosages estimated from genotype likelihoods
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PAINTOR_V3.0 Public
Forked from gkichaev/PAINTOR_V3.0Fast, integrative fine mapping with functional data
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flashpca Public
Forked from gabraham/flashpcaFast Principal Component Analysis of Large-Scale Genome-Wide Data
C++ GNU General Public License v3.0 UpdatedApr 6, 2017 -