Lists (1)
Stars
Extension of dynamax repo to cases with continuous-time dynamics with measurements sampled at possibly irregular discrete times. Allows generic inference of dynamical systems parameters from partia…
hlilab / FuFiHLA
Forked from jingqing-hu/FuFiHLAThis repo is for backup only. Please check the parent repo for details.
hlilab / minisv.py
Forked from qinqian/minisv.pyThis repo is for backup only. Please check the parent repo for details.
This is the github repo to benchmark long read SV tools
Genotyping of copy number sensitive allele-specific haplotypes
EasyFigAssembler simplifies the assembly of publication-quality scientific figures. It helps free scientists from technical burdens, so we can focus more on science.
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome
MMseqs2: ultra fast and sensitive search and clustering suite
Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
ProbMinHash – A Class of Locality-Sensitive Hash Algorithms for the (Probability) Jaccard Similarity
Centromere sequence analysis using rare k-mer markers
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration
multimodal alignment H&E RGB images to DAPI one channel images
Sparse Lazy Array Format (SLAF) for Single-Cell Genomics
Fast Approximate Membership Filters (C++)
Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.
State is a machine learning model that predicts cellular perturbation response across diverse contexts
ONEcode package to replace SAM/BAM, especially for eDNA mapping to everything