cloc counts blank lines, comment lines, and physical lines of source code in many programming languages.

Python library for immune repertoire analysis

PLMFit platform for TL on PLMs

Get your documents ready for gen AI

Single-cell analysis in Python. Scales to >100M cells.

Annotated data.

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

A beautiful, simple, clean, and responsive Jekyll theme for academics

Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

Precision HLA typing from next-generation sequencing data

LocalAI examples

🤖 The free, Open Source alternative to OpenAI, Claude and others. Self-hosted and local-first. Drop-in replacement for OpenAI, running on consumer-grade hardware. No GPU required. Runs gguf, transf…

Typer, build great CLIs. Easy to code. Based on Python type hints.

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read…

WES HLA Typing based on multiple alternative tools

Inspect: A framework for large language model evaluations

Package management made easy

This is the maintened version of PySankey (pySankeyBeta on Pypi)

A DSL for data-driven computational pipelines

This repository is a mirror. If you want to raise an issue or contact us, we encourage you to do it on Gitlab (https://gitlab.com/agrumery/aGrUM).

revamping adept from scratch to make more usable in library form

PDF references add-on for Zotero.

Intel® Extension for TensorFlow*

Bandit is a tool designed to find common security issues in Python code.

The next gen ls command

AIRR Community Data Standards