cryo tomography automatisation

Molecular dynamics simulations with an LLM agent

My own open source implementation of OpenAI's new Deep Research agent. Get the same capability without paying $200. You can even tweak the behavior of the agent with adjustable breadth and depth. R…

Ergonomic mechanical keyboard

Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.

From cryo-EM density map to atomic structure

The fast, Pythonic way to build Model Context Protocol servers

Automatic atomic model building program for cryo-EM maps

A curated list of awesome computational cryo-ET methods.

Computational Crystallography Toolbox

Chai-1, SOTA model for biomolecular structure prediction

Create macromolecular images

GPU-accelerated template matching for cryo-ET

A universal API for FIBSEM control

A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization (Nature CommsChem)

Apache DataFusion SQL Query Engine