Merge pull request #112 from robert-vogel/phasing #151

	name: CI

	on:
	push:
	branches: [ main, master ]
	pull_request:
	branches: [ main, master ]

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	jobs:
	test-all:
	runs-on: ${{ matrix.config.os }}

	name: ${{ matrix.config.os }} (${{ matrix.config.r }})

	strategy:
	fail-fast: false
	matrix:
	config:
	- {os: ubuntu-latest, r: 'release'}
	- {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'}

	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	R_KEEP_PKG_SOURCE: yes

	# Steps represent a sequence of tasks that will be executed as part of the job
	steps:
	# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
	- uses: actions/checkout@v3

	- uses: r-lib/actions/setup-r@v2
	with:
	r-version: ${{ matrix.config.r }}
	http-user-agent: ${{ matrix.config.http-user-agent }}
	use-public-rspm: true

	- uses: r-lib/actions/setup-r-dependencies@v2
	with:
	working-directory: ./STITCH
	extra-packages: \|
	any::proftools
	any::devtools
	any::testthat
	any::optparse
	any::rcmdcheck

	- name: Install dependencies
	run: export MAKE="make -j6" && sudo bash ./scripts/install-dependencies.sh

	- uses: r-lib/actions/check-r-package@v2
	with:
	working-directory: ./STITCH
	args: 'c("--no-manual", "--as-cran")'
	error-on: '"error"'
	upload-snapshots: true

	- name: Unit tests
	run: ./scripts/test-unit.sh

	- name: Acceptance tests
	run: ./scripts/test-acceptance.sh

	- name: Test the build
	run: ./scripts/build-and-install.R

	- name: Test the CLI
	run: ./scripts/test-cli.R

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