Stars
Is a Django Python web application to download PubMed data into a Microsoft Excel spreadsheet and XML files.
Positron, a next-generation data science IDE
Cross-disease comparison of case-control gut microbiome studies
List of software packages for multi-omics analysis
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
GNOLL is an efficient dice notation parser for multiple programming languages that supports a wide set of dice notation
A lightweight command line tool for calculating poker hand probabilities
⚡ A Fast, Extensible Progress Bar for Python and CLI
Vanilla regression methods for microbiome differential abundance analysis
Continuous administration of the Greene Lab's electronic scrum
Differential expression of RNA-seq data using the Negative Binomial
VOSviewer Online is a tool for network visualization. It is a web-based version of VOSviewer, a popular tool for constructing and visualizing bibliometric networks.
Official s3cmd repo -- Command line tool for managing S3 compatible storage services (including Amazon S3 and CloudFront).
Simple statistical identification and removal of contaminants in marker-gene and metagenomics sequencing data
Accurate sample inference from amplicon data with single nucleotide resolution
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
~anonymous text blasts and hotlines over signal
The second version of the Kraken taxonomic sequence classification system
Interactive fiction (text adventure) and Mud framework
Source for https://transpose-publishing.github.io (TRANsparency in Scholarly Publishing for Open Scholarship Evolution)