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1. Commits on Dec 11, 2025

   • Correct start coordinate untemplated nts on -

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2. Commits on Aug 27, 2024

   • Remove typo

     

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   • Update mapping stat output

     

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   • Remove warning message

     

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   • Remove warning negative repeat count

     

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   • Remove warning for negative repeat count

     

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3. Commits on Aug 23, 2024

   • Update install.pl

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   • Update RNAfold compile

     

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   • Add patch files

     

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   • patch_files

     

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   • install.pl

     

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4. Commits on Nov 23, 2023

   • Update make_html.pl

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5. Commits on Feb 21, 2022

   • Update quantifier.pl

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6. Commits on Nov 12, 2021

   • Update install.pl

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   • Update make_html.pl

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   • Update make_html2.pl

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7. Commits on Oct 13, 2021

   • Merge pull request #88 from mschilli87/perl_pdf_api2_install_fix_pdf_api2_xs

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   • `install.pl`: Fix Perl `PDF::API2` installation

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8. Commits on Jan 14, 2021

   • Add tutorial files for mature 5p and 3p ids

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9. Commits on Mar 13, 2020

   • Change order

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10. Commits on Feb 28, 2020

    • Catch unusual exception of using a species with parameter -t that is not in the

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11. Commits on Nov 14, 2019

    • Create proper expression output directory if option q is used with miRDeep2.pl but

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12. Commits on Nov 8, 2019

    • Merge branch 'master' of github.com:rajewsky-lab/mirdeep2

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    • Add large index call for bowtie

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13. Commits on Nov 2, 2019

    • Update README.md

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14. Commits on Sep 10, 2019

    • Use /usr/bin/perl

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15. Commits on Sep 9, 2019

    • Output 5p and 3p arms in bed files

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16. Commits on Apr 22, 2019

    • Update quantifier.pl

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17. Commits on Apr 5, 2019

    • Add description for extract_miRNAs.pl

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    • Remove cryptic warning messages regarding precursors with 0 read mappings

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18. Commits on Feb 27, 2019

    • Bump version (0.1.2) & update changelog

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19. Commits on Feb 22, 2019

    • Fix uninitialized error

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    • Fix uninitialized errors

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20. Commits on Feb 15, 2019

    • Change file permissions

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    • Merge branch 'master' of https://github.com/rajewsky-lab/mirdeep2

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