Stars
🐳📊📚 Docker Images tracking the stable Galaxy releases.
The second version of the Kraken taxonomic sequence classification system
Python package to plot a phylogenetic tree on an existing matplotlib axis.
This repository contains a tutorial and scripts to create a gene synteny and homology figure for a set of species.
Infers a phylogenetic tree from protein structures
🔎 💊 Mass screening of contigs for antimicrobial and virulence genes
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
MCP server for token-efficient large document analysis via the use of REPL state
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Enzyme-constrained genome-scale models in python
Microbial Culture Media Knowledge Graph - Comprehensive collection of 10,000+ culture media recipes from major international repositories with LinkML schema, ontology grounding, and browser-based e…
Chromosome-level scaffolding using multiple references
De novo assembler for single molecule sequencing reads using repeat graphs
Pairwise SNP distance matrix from a FASTA sequence alignment
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
motus - a tool for marker gene-based OTU (mOTU) profiling
Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly
A genome diagram generator for microbes and organelles
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.
User friendly and accurate binder design pipeline
A parallel implementation of gzip for modern multi-processor, multi-core machines.