Fast approximate string searching

k-mer-based non-Bayesian Taxonomic Classifier

Genome modeling and design across all domains of life

Download all your tiktok Likes❤️ and Followings

Simple H.264 decoder

A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.

PETadex Index Repo

Rust spin-down utility, a reimplementation of hd-idle

A post-mapping authentication toolkit for ancient metagenomics

An efficient CLI to extract sequences from the SRA

Header-only C (and python) library for fast syncmer extraction from a binary sequence. University of Tokyo collaboration.

syncmer graphs, and perhaps other sorts of sequence graphs

k-mer learning materials

Reproduce damselflies results on unitig matrices

Genomic sequence aligner

Pairwise whole genome aligner

A k-mer search engine for all Sequence Read Archive public accessions

A fast and space-efficient pre-filter for estimating the quantification of very large collections of nucleotide sequences

BWT construction and search

Robert C. Edgar's C++ coding style

1-code framework: docs, C-library, and tools

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Save or export your private and public Slack messages, threads, files, and users locally without admin privileges.

MUSET. Set of utilities for the construction of abundance unitig matrices from sequencing data

Open-source usearch

Enhanced ChatGPT Clone: Features Agents, MCP, DeepSeek, Anthropic, AWS, OpenAI, Responses API, Azure, Groq, o1, GPT-5, Mistral, OpenRouter, Vertex AI, Gemini, Artifacts, AI model switching, message…