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9 stars written in Java
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The Chemistry Development Kit

Java 577 175 Updated Apr 13, 2026

AQUAS TF and histone ChIP-seq pipeline

Java 112 40 Updated Jun 21, 2022

MAYGEN is an open source chemical structure generator based on the orderly graph generation method.

Java 54 17 Updated May 1, 2025

substructure search in large combinatorial spaces using openchemlib

Java 23 5 Updated Mar 6, 2026

Deep Learning for Chemical Image Recognition (DECIMER)

Java 19 9 Updated May 3, 2021
Java 12 1 Updated Jul 5, 2024

Knime nodes to interact with KLIFS

Java 4 Updated Nov 21, 2023

JINS Meme SDK Wrapper for Java

Java 2 1 Updated Jul 1, 2016

Code used for running the experiments of the Assay transition study

Java 1 Updated May 17, 2021