core library code

Python project to validate a phylogenetic fitted models is within the limits of inference

library aimed at scientists who want a simple tool to help log research computations

A new approach to obtaining local copies of ensembl data

Tools for analysis of sequence divergence

kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more

Analysis code from the piqtree manuscript

IQ-TREE software version 2: phylogenetics by maximum likelihood

What if the US Electoral College System was Proportional by State?

A plugin for converting a cogent3 tree to ete3 tree object

🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

DuckDB is an analytical in-process SQL database management system

A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference

A new kind of Progress Bar, with real-time throughput, ETA, and very cool animations!

an r package for processing and analysing flow cytometry data

Experiments for spectral cluster supertree

A selection of research/papers I was involved with.

Comparative Genomics Toolkit 3

Materials for the Phylomania workshop

ANU Honours Thesis

A supertree method for rooted source trees

We're starting a cult where time is counted in base 10 instead of base 12