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16 stars written in Python
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A new kind of Progress Bar, with real-time throughput, ETA, and very cool animations!

Python 6,239 232 Updated Oct 10, 2025

Comparative Genomics Toolkit 3

Python 134 67 Updated Feb 9, 2026

A Python library that exposes features from IQ-TREE - efficient software for phylogenomic inference

Python 41 10 Updated Feb 9, 2026

A new approach to obtaining local copies of ensembl data

Python 24 17 Updated Jan 20, 2026

🌟🧬 GraphBin-Tk: assembly graph-based metagenomic binning toolkit

Python 22 6 Updated May 29, 2025

Python project to validate a phylogenetic fitted models is within the limits of inference

Python 19 2 Updated Dec 15, 2025

Tools for analysis of sequence divergence

Python 15 4 Updated Feb 9, 2026

library aimed at scientists who want a simple tool to help log research computations

Python 12 4 Updated Dec 15, 2025

A supertree method for rooted source trees

Python 12 1 Updated Feb 3, 2026

core library code

Python 11 1 Updated Feb 9, 2026

Materials for the Phylomania workshop

Python 8 4 Updated Jun 25, 2024

A plugin for converting a cogent3 tree to ete3 tree object

Python 5 1 Updated Dec 15, 2025

Analysis code from the piqtree manuscript

Python 2 2 Updated Dec 15, 2025

Experiments for spectral cluster supertree

Python 2 Updated May 8, 2024

What if the US Electoral College System was Proportional by State?

Python 2 Updated Nov 4, 2024

ANU Honours Thesis

Python 1 Updated Dec 6, 2023