Spiritual successor to picard for sequencing qc

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

Official Python SDK for the Virtual Cell Pharmacology Initiative

Python toolkit for quantitative finance

A multi-llm Emacs shell (ChatGPT, Claude, DeepSeek, Gemini, Kagi, Ollama, Perplexity) + editing integrations

A repository for GeneLab Training documentation.

🧑‍🏫 60+ Implementations/tutorials of deep learning papers with side-by-side notes 📝; including transformers (original, xl, switch, feedback, vit, ...), optimizers (adam, adabelief, sophia, ...), ga…

Scripts for simulations in "Most synonymous mutations in yeast are strongly non-neutral"

Direct estimation of mean and covariance from single cell RNA seq experiments

Resumes generated using the GitHub informations

Notion API client SDK, rewritten in Python! (sync + async)

The IB Fate Wheel brought to Slack

Bioinformatic Tool Shop

Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.

Unofficial Python API client for Notion.so

A GitHub Action for installing and configuring the gcloud CLI.

mgatk: mitochondrial genome analysis toolkit

Match up paired end fastq files quickly and efficiently.

Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor

APA Regression Net - Predict and Engineer Alternative Polyadenylation

Financial data platform for analysts, quants and AI agents.

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

Add RX tag to BAM file, from UMI read name

An Emacs framework for the stubborn martian hacker

Application that displays stats from the Kento RankMe plugin

Ginkgo SARS-CoV-2 synthesis efforts: overviews and data

Helper scripts for bcbio-nextgen

Automated Docker builds for bcbio

Alignment and variant-calling pipeline for Illumina HIV sequences.