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Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs

Snakemake pipeline for analysis of pathogen genomes. Will be pathogen-agnostic in the future but is currently designed for *Vibrio Cholerae*

Tool for generating influenza A virus genome sequences from FASTQ data

Use tbl2asn forever by pretending that it's still 2019

Visualize microbial evolution at the SNP level!

Benchmarking several NVIDIA GPUs with dorado

local sequence management lightweight tools

Amplicon sequencing workflow with snakemake and dada2

Pipeline for running routine quality control analyses on illumina sequence data