Stars
A PyTorch Basecaller for Oxford Nanopore Reads
An R script for calculating the Thornthwaite Potential Evapotranspiration on global temperature raster layers
A methods testing pipeline for classification of short-read plant metagenomic data from environmental or ancient DNA
RGGS short course in spatial bioinformatics
SICG Workshop -- Introduction to Python Programming for Bioinformatics
R library for the analysis of spatial biodiversity data. Including tools to estimate climate from species coexistence including CRACLE and Thompson's Mutual Climatic Range technique.
R code and results files to create figures published in Harbert and Nixon, 2018 (Open Quaternary)
Towards a framework for parallel computing with raster and other geospatial data objects in R.
Finally an R package dedicated to the CRACLE method for estimating climate from biological proxies.
Repository for processing metabarcoding data from our Stonehill aquatic eDNA project.
Testing data preprocessing and automation for SDMs using ENMeval and Maxent
Geospatial lessons for BIO3331 -- Notes and R scripts
Creating streetmap images using OSM data and *sometimes* landsat base layers
Experimental geographic manipulation functions adapted to GPU processing with CUDA.
Welcome to the offical webpage for the R-package ‘humboldt’
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…
Automated de novo assembly of whole chloroplast genomes.
Scalable long read self-correction and assembly polishing with multiple sequence alignment
Analysis pipelines from Oxford Nanopore Technologies' Research Division
Analysis components from Oxford Nanopore Research