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Stars
AI coding assistant skill (Claude Code, Codex, OpenCode, Cursor, Gemini CLI, and more). Turn any folder of code, SQL schemas, R scripts, shell scripts, docs, papers, images, or videos into a querya…
Embedding Atlas is a tool that provides interactive visualizations for large embeddings. It allows you to visualize, cross-filter, and search embeddings and metadata.
The official repo for “Dolphin: Document Image Parsing via Heterogeneous Anchor Prompting”, ACL, 2025.
🤖 MLE-Agent: Your intelligent companion for seamless AI engineering and research. 🔍 Integrate with arxiv and paper with code to provide better code/research plans 🧰 OpenAI, Anthropic, Gemini, Ollam…
Tesseract Open Source OCR Engine (main repository)
Literature for Human-AI collaboration, Hybrid Intelligence, Human-AI interaction
Trinity assembly pipeline for BioCommons / USydney Informatics Hub - Nextflow porting
A set of workflows written in Nextflow for Genome Annotation.
Custom source code, workflows and jupyter notebooks used in the analysis of the wheat genotypes sequenced in the Whealbi Project
Aranet4, Aranet2 and Aranet Radiation Python client
A fully automated gene annotator from RNA-Seq expression data
igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
Inference of ploidy and heterozygosity structure using whole genome sequencing data
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-Expression Network (GCN) construction
A fast K-mer counter for high-fidelity shotgun datasets
Demo for using MinIO object store with Nextflow and CWL workflows
base-accurate DNA sequence alignments using edlib and mashmap2
A collection of Dockerfiles and Singularity deffiles for Pawsey-supported images