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@stephenslab

Stephens lab

Research in statistical and computational methods for genetics at the University of Chicago.

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  1. susieR susieR Public

    R package for "sum of single effects" regression.

    R 244 54

  2. mashr mashr Public

    An R package for multivariate adaptive shrinkage.

    R 93 22

  3. flashr flashr Public

    R package for Empirical Bayes Factor Analysis.

    R 52 11

  4. fastTopics fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    R 85 10

  5. ebnm ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    R 13 10

  6. dsc dsc Public

    Repo for Dynamic Statistical Comparisons project

    HTML 13 11

Repositories

Showing 10 of 106 repositories
  • susieR Public

    R package for "sum of single effects" regression.

    stephenslab/susieR’s past year of commit activity
    R 244 54 94 1 Updated Feb 6, 2026
  • fsusieR Public

    R package for "Sum of Single Functions" (fSuSiE) with applications to fine-mapping of molecular profiles.

    stephenslab/fsusieR’s past year of commit activity
    R 7 1 4 2 Updated Feb 3, 2026
  • mvsusieR Public

    A new model and algorithm for multivariate Bayesian variable selection regression.

    stephenslab/mvsusieR’s past year of commit activity
    Jupyter Notebook 24 8 26 0 Updated Feb 3, 2026
  • udr Public

    R package implementing empirical Bayes methods for multivariate normal means.

    stephenslab/udr’s past year of commit activity
    R 8 1 9 0 Updated Jan 28, 2026
  • fashr-paper Public

    The online code repository for FASH (fashr).

    stephenslab/fashr-paper’s past year of commit activity
    R 1 0 0 0 Updated Jan 22, 2026
  • fsusie-experiments Public

    Code and data for fsusie paper.

    stephenslab/fsusie-experiments’s past year of commit activity
    R 1 MIT 1 0 0 Updated Jan 21, 2026
  • fashr Public

    R package for functional adaptive shrinkage (FASH).

    stephenslab/fashr’s past year of commit activity
    R 2 0 1 0 Updated Jan 20, 2026
  • mr.mashr Public

    R package implementing methods for multivariate multiple regression with adaptive shrinkage priors.

    stephenslab/mr.mashr’s past year of commit activity
    R 5 3 0 0 Updated Jan 8, 2026
  • fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    stephenslab/fastTopics’s past year of commit activity
    R 85 10 16 1 Updated Dec 26, 2025
  • mr.ashr Public

    R package implementing methods for multiple regression with adaptive shrinkage priors ("mr.ash").

    stephenslab/mr.ashr’s past year of commit activity
    R 4 0 6 1 Updated Dec 16, 2025
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