A C++ header-only HTTP/HTTPS server and client library

✨ Magical headers that make your C++ library accessible from JavaScript 🚀

tools for working with genome variation graphs

Accelerated BLAST compatible local sequence aligner.

🏅State-of-the-art learned data structure that enables fast lookup, predecessor, range searches and updates in arrays of billions of items using orders of magnitude less space than traditional indexes

C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

The codebase of the OpenMS project

Graph-based alignment (Hierarchical Graph FM index)

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs

Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

base-accurate DNA sequence alignments using WFA and mashmap3

Assembled Genomes Compressor

SIMD partial order alignment tool/library

A fast whole-genome aligner based on de Bruijn graphs

alignment to variation graph inducer

Dynamic succinct/compressed data structures

linearize and simplify variation graphs using blocked partial order alignment

extract MSAs from genome variation graphs

Optimized sequence graph implementations for graph genomics

base-accurate DNA sequence alignments using edlib and mashmap2

GBWT-based handle graph

memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort

Library for the Handle Graph abstraction

succinct labeled graphs with collections and paths

High Performance Sorting Based Distributed memory K-mer counter

A toolkit for exploring regions of variation in pangenomes

sequence to graph mapper

WFλ - wavefront alignment with callback match function