Repository to host tool-specific module files for the Nextflow DSL2 community!

Pipeline to fetch metadata and raw FastQ files from public databases

Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.

Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.

B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as t…

A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.

a nextflow pipeline for creating a pangenome with minigraph-cactus

Repository to host tool-specific module files for the Nextflow DSL2 community!