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De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, including both the backbone and side chain.
A comprehensive library for computational molecular biology
Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3
Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and relies on a tailored scalable transformer architecture.
Compressing protein structures effectively with torsion angles
rapids_singlecell: GPU-accelerated framework for scRNA analysis
Map and Browse Google Timeline Semantic Location History data
User friendly and accurate binder design pipeline
HMMER: biological sequence analysis using profile HMMs
Implementation of Alphafold 3 from Google Deepmind in Pytorch
Bilingual Language Model for Protein Sequence and Structure
Flipper: Reproducing the FLIP protein benchmark results.
BioNeMo Framework: For building and adapting AI models in drug discovery at scale
Generation of protein sequences and evolutionary alignments via discrete diffusion models
A generative model for programmable protein design
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…
Awesome papers related to generative molecular modeling and design.
CUDASW++4.0: Ultra-fast GPU-based Smith-Waterman Protein Sequence Database Search
NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.
A Euclidean diffusion model for structure-based drug design.
Simple Tax Reporting Tool for share transactions on foreign exchanges
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.