Skip to content
View sagizty's full-sized avatar
🎯
Runing
🎯
Runing

Block or report sagizty

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don't include any personal information such as legal names or email addresses. Markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
sagizty/README.md

Hi there 👋

  • 📫 email me at: zhangtianyi@u.nus.edu

  • 🔭 I’m currently working on Computational Pathology, at/with:

CVPD group at Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore

PuzzleLogic & IMVR at National University of Singapore (NUS), Singapore

Anurag's GitHub stats

Reviewer: IEEE T-PAMI, IEEE TNNLS, IEEE JBHI, IEEE TBME, CMPB, CVPR, AAAI, MICCAI

Recent Works:

Sicheng Chen, Tianyi Zhang, Dankai Liao, Dandan Li, Low Chang Han, Yanqin Jiang, Yueming Jin, Shangqing Lyu, "PathRWKV: Enabling Whole Slide Prediction with Recurrent-Transformer" arXiv: 2503.03199, 2025.

Zeyu Liu, Yufang He, Tianyi Zhang, Chenbin Ma, Fan Song, Huijie Wu, Ruxin Cai, Haoran Guo, Haonan Zhang, Bo Wen, Peng Zhang, Dachun Zhao and Guanglei Zhang, "StainExpert: A Unified Multi-Expert Diffusion Framework for Multi-Target Pathological Stain Translation", IEEE Transactions on Medical Imaging, accepted

Zeyu Liu*, Tianyi Zhang*, Yufang He, Yunlu Feng, Yu Zhao, and Guanglei Zhang, “Generating Progressive Images from Pathological Transitions via Diffusion Model,” In International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), pp. 308-318, 2024.

Yufang He, Zeyu Liu, Mingxin Qi, Shengwei Ding, Peng Zhang, Fan Song, Chenbin Ma, Huijie Wu, Ruxin Cai, Youdan Feng, Haonan Zhang, Tianyi Zhang, Guanglei Zhang, “PST-Diff: Achieving High-consistency Stain Transfer by Diffusion Models with Pathological and Structural Constraints,” IEEE Transactions on Medical Imaging, 2024, 43(10), pp.3634-3647.

Tianyi Zhang, Shangqing Lyu, Yanli Lei, Sicheng Chen, Nan Ying, Yufang He, Yu Zhao, Yunlu Feng, Guanglei Zhang, “PuzzleTuning: explicit bridge pathological and natural image with puzzles,” arXiv: 2311.06712, 2023. (under-review)

Nan Ying*, Yanli Lei*, Tianyi Zhang*, Shangqing Lyu, Chunhui Li, Sicheng Chen, Zheyu Liu, and Guanglei Zhang, “CPIA Dataset: A Comprehensive Pathological Image Analysis Dataset for Self-supervised Learning Pre-training”, Biomedical Signal Processing and Control, 2025. (in-press, arxiv 2310.17902)

Tianyi Zhang, Zhiling Yan, Chunhui li, Nan Ying, Yanli Lei, Shangqing Lyu, Yunlu Feng, Yu Zhao, Guanglei Zhang, “CellMix: A general instance relationship based method for data augmentation towards pathology image analysis,” IEEE Transactions on Neural Networks and Learning Systems, 2025, 36(9), pp.16020 - 16034.

Tianyi Zhang, Youdan Feng, Yu Zhao, Yunlu Feng, Yanli Lei, Nan Ying, Fan Song, Zhiling Yan, Yufang He, Aiming Yang, and Guanglei Zhang, “SI-ViT: Shuffle instance-based Vision Transformer for pancreatic cancer ROSE image classification,” Computer Methods and Programs in Biomedicine, 244, p. 107969. 2024

Tianyi Zhang, Yunlu Feng, Yu Zhao, Guangda Fan, Aiming Yang, Shangqing Lyu, Peng Zhang, Fan Song, Chenbin Ma, Yangyang Sun, Youdan Feng, and Guanglei Zhang, “MSHT: Multi-stage hybrid transformer for the ROSE image analysis of pancreatic cancer,” IEEE Journal of Biomedical and Health Informatics, 2023, 27(4), pp.1946 - 1957.

Pinned Loading

  1. PuzzleTuning PuzzleTuning Public

    The official repo of PuzzleTuning: Explicitly Bridge Pathological and Natural Image with Puzzles (arXiv: 2311.06712)

    Jupyter Notebook 17 3

  2. Multi-Stage-Hybrid-Transformer Multi-Stage-Hybrid-Transformer Public

    Official release of MSHT: Multi-stage Hybrid Transformer for the ROSE Image Analysis of Pancreatic Cancer IEEE JBHI https://ieeexplore.ieee.org/document/10006398

    Jupyter Notebook 76 7

  3. CellMix CellMix Public

    Official release of CellMix: A general instance relationship based method for data augmentation towards pathology image analysis IEEE TNNLS (arXiv:2301.11513)

    Jupyter Notebook 20

  4. MIL-SI MIL-SI Public

    Official release of Shuffle Instances-based Vision Transformer for Pancreatic Cancer ROSE Image Classification CMPB

    Jupyter Notebook 25 3

  5. VPT VPT Public

    Unofficial code for VPT(Visual Prompt Tuning) paper of arxiv 2203.12119

    Python 163 10

  6. Insight Insight Public

    learning materials for PyTorch beginners

    Jupyter Notebook 173 22