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Difference between targets and receivers

Status: Open.

#339 In saeyslab/nichenetr;

· bapoorva opened on Nov 13, 2025

Inference of the Receptors for unknown Ligands

Status: Open.

#337 In saeyslab/nichenetr;

· dslv3y opened on Oct 20, 2025

error with nichenet_seuratobj_aggregate

Status: Open.

#333 In saeyslab/nichenetr;

· mvereten opened on Aug 10, 2025

Very low AUPR values in ligand activity results

Status: Open.

#332 In saeyslab/nichenetr;

· psuarezana opened on Aug 5, 2025

convert_alias_to_symbol giving duplicate gene names

Status: Open.

#331 In saeyslab/nichenetr;

· annaborchers opened on Jul 16, 2025

How to compare multiple samples

Status: Open.

#329 In saeyslab/nichenetr;

· fightingevery opened on Jun 25, 2025

Verschueren LR pairs directionality

enhancementNew feature or requestNew feature or request

Status: Open.

#317 In saeyslab/nichenetr;

· emmamoliere opened on Mar 7, 2025

Ligand Target Signalling on bulk RNAseq datasets

Status: Open.

#313 In saeyslab/nichenetr;

· Shanthosh29 opened on Feb 5, 2025

"Error: None of the features provided found in this assay" when running nichenet_seuratobj_aggregate

Status: Open.

#310 In saeyslab/nichenetr;

· kangjiajinlong opened on Nov 26, 2024

DiffNicheNet for the same cell type in different time points?

Status: Open.

#304 In saeyslab/nichenetr;

· arunchakra opened on Sep 27, 2024

assign_ligands_to_celltype erroe message

bugSomething isn't workingSomething isn't working

Status: Open.

#303 In saeyslab/nichenetr;

· wang2034 opened on Sep 13, 2024

Parallelization error when optimizing parameters for NicheNet

Status: Open.

#292 In saeyslab/nichenetr;

· tkapello opened on Aug 6, 2024