Docker image with all tools from the Saez lab based on bioconductor/bioconductor_docker.
To run a container locally use the command:
docker run -p 8787:8787 tanevski/saezverse:latest
This will make RStudio available at http://localhost:8787. Login with username rstudio and password saezlab.
| Package | More info |
|---|---|
| corneto | https://pypi.org/project/corneto/ |
| decoupler | https://pypi.org/project/decoupler/ |
| kinact | https://github.com/saezlab/kinact |
| liana | https://pypi.org/project/liana |
| networkcommons | https://pypi.org/project/networkcommons |
| omnipath | https://pypi.org/project/omnipath/ |
| pypath | https://pypi.org/project/pypath-omnipath/ |