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Unexpected renaming of cell names in pca embeddings

Status: Open.

#287 In satijalab/azimuth;

· dimitrios-pm opened on Dec 15, 2025

Error in proj.pca.list[[1]] : subscript out of bounds

Status: Open.

#286 In satijalab/azimuth;

· amayizara opened on Dec 14, 2025

Clarification about message "Only 1 SCT model detected, no need to select" and how to do consider batches during <code>RunAzimuth</code>

Status: Open.

#285 In satijalab/azimuth;

· denvercal1234GitHub opened on Dec 13, 2025

How to use our own reference

Status: Open.

#283 In satijalab/azimuth;

· Daisy-Chilin opened on Dec 1, 2025

Failure of Azimuth installation

Status: Open.

#282 In satijalab/azimuth;

· TheangeawK opened on Nov 28, 2025

RunAzimuth &gt; TransferData throws "invalid subscript type 'list'"

Status: Open.

#279 In satijalab/azimuth;

· smo-1212 opened on Oct 22, 2025

zenodo for mouse pansci only includes original rds, not ref.rds and idx.annoy like other references - suspect error in snakemake file

Status: Open.

#277 In satijalab/azimuth;

· turkeyri opened on Oct 3, 2025

Unable to download TSV and full results data

Status: Open.

#276 In satijalab/azimuth;

· poconnel3 opened on Oct 3, 2025

Mouse Pansci reference data - markers for Sub_cell_types

Status: Open.

#275 In satijalab/azimuth;

· sgaedcke opened on Oct 2, 2025

IntegrateLayers(method = scVIIntegration) fails with “ModuleNotFoundError: No module named ‘scanpy’” even when conda_env points to a working scvi-tools environment

Status: Open.

#273 In satijalab/azimuth;

· Doreen320 opened on Aug 9, 2025

IntegrateLayers(method = scVIIntegration) fails with “ModuleNotFoundError: No module named ‘scanpy’” even when conda_env points to a working scvi-tools environment

Status: Open.

#272 In satijalab/azimuth;

· Doreen320 opened on Aug 9, 2025

Azimuth 0.5.0 incompatible with Seurat v5 objects ?

Status: Open.

#271 In satijalab/azimuth;

· pmeran opened on Aug 5, 2025