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backmap Public
Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
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busco2snap Public
Create a SNAP model from BUSCO output
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msat-loci-identification Public
De novo microsatellite loci identification pipeline as used in Schröder et al. (2021)
Perl MIT License UpdatedFeb 26, 2021 -
wtdbg2-racon-pilon Public
Wrapper for overlap assembly of long reads and polishing
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maker-functional Public
Adjustment of MAKER's functional annotation scripts
Perl UpdatedFeb 25, 2020 -
autotrim Public
Trimming (overrepresented k-mers from) multiple fastq files
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autoautoAug Public
Execute Augustus' autoAug.pl automatically if no --singleCPU option is set.
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MGSE Public
Forked from bpucker/MGSEMapping-based Genome Size Estimation
Python UpdatedJun 7, 2019 -
figtree Public
Forked from rambaut/figtreeAutomatically exported from code.google.com/p/figtree
Java UpdatedJan 31, 2019 -
RAILS Public
Forked from bcgsc/RAILSRAILS and Cobbler
Perl GNU General Public License v3.0 UpdatedJan 21, 2019 -
DBG2OLC Public
Forked from yechengxi/DBG2OLCThe genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS seq…
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