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1. rna_fusion_quant_ill rna_fusion_quant_ill Public

   Python

2. bact_shotgun_assembl bact_shotgun_assembl Public

   Python 1

3. skallel skallel Public

   Set of scripts for specific tasks in scikit-allel

   Python

4. wdetect wdetect Public

   Python

5. exoVar exoVar Public

   This pipeline calls somatic variants from tumor-normal paired whole-exome sequencing data using Mutect2 in scatter-gather mode for parallel processing. It identifies SNVs and indels, applies filter…

   Python

6. somaVar somaVar Public

   This pipeline processes targeted gene panel data with UMI-based consensus calling to improve variant detection sensitivity. UMI consensus building collapses PCR duplicates and corrects sequencing e…

   Python