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SciPhy Public
Forked from azwaans/SciPhySequential Cas9 Insertion based Phylogenetics (SciPhy) for BEAST2
Java GNU General Public License v3.0 UpdatedSep 24, 2025 -
TiDeTree-Tutorial Public
Phylodynamic analysis of single-cell lineage tracing data with TiDeTree
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tidetree Public
A Bayesian phylogenetic framework to estimate single-cell trees and population dynamic parameters from genetic lineage tracing data
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sciphy-materials Public
Here, we publish all scripts to reproduce the analyses in the manuscript Sciphy: A Bayesian phylogenetic framework using sequential genetic lineage tracing data
R GNU General Public License v3.0 UpdatedAug 9, 2025 -
CBAN Public
Forked from CompEvol/CBANreleases of beast2 packaged zip files in a reliable location
JavaScript UpdatedApr 21, 2025 -
mt-SCITE Public
Forked from cbg-ethz/mt-SCITETree inference from mitochondrial mutations
Jupyter Notebook UpdatedNov 6, 2024 -
Code to reproduce the results of the paper "Quantitative Comparison of pylodynamic models for structured populations"
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single-cell-best-practices Public
Forked from theislab/single-cell-best-practiceshttps://www.sc-best-practices.org
Jupyter Notebook Other UpdatedOct 25, 2024 -
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PhISCS Public
Forked from sfu-compbio/PhISCSTumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data
Python UpdatedSep 26, 2024 -
Strategies-Sequential-Editing Public
Forked from nmulberry/Strategies-Sequential-EditingR BSD 3-Clause "New" or "Revised" License UpdatedSep 25, 2024 -
bmm-simulate Public
Forked from pomo-dev/bmm-simulateA boundary mutation model simulator
Haskell BSD 3-Clause "New" or "Revised" License UpdatedSep 23, 2024 -
tidetree-material Public
Analyses and figures associated with the tidetree publication
R UpdatedSep 15, 2022 -
feast Public
Forked from tgvaughan/feastTasty additions to BEAST 2
Java GNU General Public License v3.0 UpdatedFeb 3, 2021 -
MultiTypeTree Public
Forked from tgvaughan/MultiTypeTreeBEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.
Java GNU General Public License v3.0 UpdatedOct 8, 2020 -
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bdmm Public
Forked from denisekuehnert/bdmmPhylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data
Java GNU General Public License v3.0 UpdatedMar 28, 2019 -
beast2 Public
Forked from CompEvol/beast2Bayesian Evolutionary Analysis by Sampling Trees
Java GNU Lesser General Public License v2.1 UpdatedSep 6, 2018 -
material Public
Forked from sandarlim/materialLinks to materials for STA 426 Fall Semester 2017
HTML UpdatedOct 25, 2017 -
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eigen Public
Forked from libigl/eigenThis is a mirror of the latest stable version of Eigen.
C++ Other UpdatedMar 21, 2017 -
TimeTree Public
Forked from tgvaughan/TimeTreePython module providing classes for parsing, manipulating and visualizing rooted phylogenetic time trees.
Python UpdatedDec 5, 2015
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